Browsing by Author "Allam, Mushal"

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    Genomics sequence data of a drug-resistant Pseudomonas aeruginosa producing Tripoli Metallo- β-lactamase 1 isolated from Sudan
    (Data in Brief, 2024) Mohammed, Sara E.; Hamid, Omnia; Abdelrahim, Mohammed; Ismail, Arshad; Smith, Anthony M.; Allam, Mushal
    We whole-genome sequence a drug-resistant Pseu- domonas aeruginosa strain (PANU108) isolated in 2020 from an elderly male patient admitted to an intensive care unit with bloodstream infection in Khartoum, Su- dan. The analysis of the sequenced data revealed that the strain is sequence type 319 (ST319) and carrying 11 acquired resistance genes belonging to 5 drug classes. Interestingly, we found that PANU108 strain harbouring blaTMB-1 resistance gene. To the best of our knowledge,
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    Whole-genome sequence data of a Salmonella enterica serovar Rissen sequence type 8877 isolated from cracked table egg in Sudan
    (Data in Brief, 2023) Elhassan, Mortada M.O.; Adam, Habiba B.A.; Fagir, Shaimaa S.A.O.; Mohamed, Sofia B; Khaier, Mona A.M.; Abdulaziz, Romisa; Ismail, Arshad; Allam, Mushal
    Salmonella enterica serovar Rissen is an emerging and impor- tant Salmonella serovar prevalent in live animals and foods from retail markets worldwide. Here, we describe the whole- genome sequence of Salmonella enterica Serovar Rissen Se- quence Type 8877 isolated from a cracked table egg in Su- dan. The whole-genome sequencing was obtained using Illu- mina Miseq platform. The quality of the sequenced read, the De novo assembly, and the sequencing typing was conducted by JEKESA pipeline ( https://github.com/stanikae/jekesa ). The assembled genome was also uploaded to the Center for Ge- nomic Epidemiology web server to determine acquired an- tibiotic resistance genes, predict the serovar, and the anti- genic profile. The genome of Salmonella enterica serovar Ris- sen 1-M1 was found to harbor 4,689 protein-coding genes, 96 RNA genes, and 115 pseudogenes, as predicted by NCBI Prokaryotic Genome Annotation Pipeline. This whole genome shotgun project has been deposited at DDBJ/ENA/GenBank under accession JAPSFB0 0 0 0 0 0 0 0 0.

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